>...if there's a software running from the card can one extract the card...
Not wise! Why would you even want to? Perhaps it's time to read up once again about all the problems Vogue users have had with card coruption, and this is without any bold move like pulling it out during data transfer:
http://forum.ppcgeeks.com/showthread.php?t=11404
http://forum.ppcgeeks.com/showthread.php?t=18668