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have not heard this statement before. Is this in referance to Li-ion Polymer or regular Li-ion batteries? your quote cuts off and is unclear.
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It refers to all modern batteries without memory effects (NiMH, Li-ion, and Li-Poly)
Deep cycles literally destroy the substrate inside these batteries - you are killing them a little bit, each time, which is why they "lose capacity" with each (deep) cycle.
It's not exact, but you could think of a 1000 cycle battery as having 10.000 10% cycles.
And yeah, all this makes your Rev A faster, and your GPS more accurate.
Bottom line, charge early and often.