After playing with this for a couple days, here's a quick review. Shuffle does work now. You can even set previous/next button to change song, which will also shuffle if you have it enabled. I wasn't able to get the repeat song to work; however, I never have and probably never will use that feature, so not a deal breaker for me, I'm just reporting in.
Finally, some of you may have noticed that the buttons on the options menu have gotten smaller. It's just part of the default skin and not a bug with the app. The menus can be made larger again by using one of the skins I linked to in
post #8. I still use ManilaLike, gotta love that scroll wheel.
Also, the skins for the previous version(.0.3.2) still work on this newer version. Although I linked to the official skin thread in the first post and #8 as well,
here it is again just for your convenience.