Thank you for a pretty solid 6.5 Rhodium ROM. There's one issue that hopefully you can address with a future rom. When the Programs tab is added in Manilla there is a soft keys issue where the "All Programs" and "Remove" soft keys get stuck and are covering up the soft keys of other tabs. It basically makes manilla non-functional with programs tab enabled. There is a fix for this described at:
http://forum.xda-developers.com/showpost.php?p=3526829
Unfortunately this can only be fixed when creating the ROM as the script file which needs to be replaced cannot be overwritten.