BooDaddy,
Before you do anything else, you may need to save yourself some trouble and hard reset then interrupt the Verizon customizations - If you selected Verizon as your carrier during your build, then the customizations are already built-in, and running them from the extended rom will cause some issues - mainly with text and picture messaging I think - that you wouldn't see immediately.
Yes, the stock verizon flash includes the extended rom, so you can do whatever you like with it on your custom. (I personally unlock it, empty it, and then install software to it.)
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