are they being deleted or just marked as read? In the gmail settings using the web insterface you have a choice to select where gmail stores message downloaded by pop3. if you have it selected to archive the copies then gmail will move it to the archive folder and out of your inbox which will give the appearance that they are gone. what you need to do is change that setting to store in inbox. to check that just click on the all mail tab to see if your messages are still there.
let me know, gmail is a pain in the asssssss with the treo
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