I think (after about a bazillion hard resets) I've finally tracked this problem down. It's not an application conflict. It only happens after I do a registry cleanup in Pocket Mechanic Pro, and only then when I check the "Empty Open/Open Doc keys" and "Empty registry keys" boxes. Some of you registry gurus might know why this is the case, but the easy fix is to not do a registry cleanup with either of those boxes checked.
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