It's definitely all the stuff installed on your storage card. Never install today plug-ins or anything that runs on the today screen on your storage card, only in main memory. When your phone goes to sleep, it shuts off the memory card interface. When it tries to wake back up the card takes a moment to reinitialize but by then the system is looking for things to put on your today screen that isn't available because it "looks" like you have no storage card installed. A good way to test if this is true is to pop the storage card when it gets stuck like that, and it might come out of sleep that way. I would reset everything and try and install today screen stuff (and some synching things) on the main memory. Leave the memory card for games and other programs that don't run at startup.
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