I'll investigate the disappearance of the .ROM and .VM folders, which confuses me because they should be there. It's entirely possible that my zip program refused to see them.
The .NET errors are due to the majority of the files being read-only. I'll address that in all future releases so that it doesn't happen again (including the one I'll be upping shortly to deal with these current issues).
Does anybody know what TheRocoLoco is hitting up against? I suppose it could be a possibility that the files being read-only carries over to the device...?
I'll toss another ROM and another ROM kitchen up to see whether that works better. I'll update this when they're both up, because it would be good if we could actually get something working.