Yep, we might want to go wiki for this... not only because it's a lot of info, but because it's a tree of info, with cross-relationships.
3.x: via a rom image or via the Rom Kitchen (RK lets you build your own custom rom)
What reg hacks work at all
What do you do with your extended rom (by carrier, we already know Sprint, Verizon have stuff that you don't want installed with any AKU > 2.x, looks like Altell is also in that boat)
And so on... as the "fix" for some of these depends on what rom you've got, and how you got it... it's almost impossible to list all the possible combos.
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