Haha sorry bro I have a bad memory, and with selling my house, starting a new job and trying to buy another house my brain is fried lol.
So what's the issue that you are wanting to wipe your card? Trying to partition it? I'm not for sure if you wipe the card and stick it back in if it will rebuild all of those folders, I have never tried that but as long as you nandroid you can always flash back to that if you need to if something goes wrong.
Have you ventured to flash any other roms or just sticking with Synergy? Below is a link to a great ROM that I have been running lately, a Mod named Riley turned me onto it, very stable and snappy, don't believe that I have ran into any issues with it, check it out and see what you think if you are interested in flashing another ROM.
xda-developers - View Single Post - [ROM](10-19-11) SNS Gingerbread v1.9,OTA 4.53 Sense 1.0, CIQ removed, Quick Settings