I had something similar happened to my background every time I switch themes. what I did was select the custom theme then go to today screen and pull the menus the it would show a different color after that I switch to red theme and switch back to the theme I wanted . on my wx sometimess my background pics switch with window theme. I don't if this helps but good luck. 
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samsung 680, a700, 920, legendary 9k, a900, 6700, treo 700wx, 6800, 6700, 6800(collecting dust), as of 01/09/08 htc touch, and 5/24/08 finally the blackberry curve, 10/15/08 touch pro, 4/30/09 boring blackberry curve again.
12/04/09 DROID.
WM, HTC, and BB can go to hell now.
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