I have done extensive testing of different configs to root this issue out, and I feel comfortable saying that this is definitely a radio issue. Flashing back to 1.40 has solved all repeatable issues for me, and I have not had a lockup in the 3 hours since performing the downgrade, whereas it happened to me when the new radio (1.47) would switch in and out of EVDO (I work in a fringe area, so it is easy for me to test). This issue always presented itself, without fail, when my Mogul powered itself down after 5 minutes of non-use while plugged in. I would watch the signal switch (through the dimmed screen) once or twice before it happened.
While there may be some other compatibility issues with 3rd party apps and this rom, I can assure you that the problem happened for me with nothing at all on the machine other than the new rom.
And as a side note to Sprint and HTC: Get your shit together.
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