Ok (not sarcastically) thanks to everyone that didn't answer this. It caused me to play around with settings a ton and I found out what it is. If you set "Encode photos in portrait mode" in advanced config then it will do this (or at least for me it did). I must have thought that it would change the photos to portrait mode when I was holding the camera that way. So if anyone else gets stuck here, check to see if that is the option you have set.
Now to install all the programs and set up all my settings I had before that I didn't even need to get rid of.
